reset
load =pdb/5I95
select all
wireframe off; backbone off; cpk off;
select all
cartoons
color chain
set echo bottom right; font echo 16 Calibri; color echo grey
echo Cartoon structure, colored by chain.
pause
resume
wireframe off; backbone off; cpk off;
select all
color structure
echo Cartoon structure, colored by secondary structure.
pause
resume
wireframe off; backbone off; cpk off;
select all
color structure
echo Protein colored by secondary structure and ligand colored by elements.
select ligand
wireframe 100
cpk
color cpk
pause
resume
select all
cartoon off; wireframe off;
spacefill on
color cpk
echo Protein shown as Van der Waals radius, colored by elements.
pause
resume
restrict none
zoom 300
select helix
restrict 266-277:A
wireframe 0.3
center selected
calculate hbonds
hbonds 30
echo Hydrogen bonds in alpha helix's backbone.
spin
pause
resume
hbonds off
zoom 300
restrict none
select sheet
wireframe 0.3
restrict (182-186:A, 216-220:A)
calculate hbonds
hbonds 20
center selected
echo Hydrogen bonds in beta sheet's backbone.
spin
© Наумова Юлия, 2018