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Результаты практикума 14
Задание 1
Bacillus subtilis
ATG 3312
TTG 558
GTG 389
ATT 11
ATC 3
CTG 5
PSEUDOGENE: ATT 2
PSEUDOGENE: GTA 1
PSEUDOGENE: ATG 20
PSEUDOGENE: CAA 2
PSEUDOGENE: GTG 6
PSEUDOGENE: CTG 1
PSEUDOGENE: TTT 2
PSEUDOGENE: AAT 2
PSEUDOGENE: CTA 2
PSEUDOGENE: TTG 6
PSEUDOGENE: ATC 2
PSEUDOGENE: GAT 2
PSEUDOGENE: GGT 1
PSEUDOGENE: TAT 1
PSEUDOGENE: ACA 1
PSEUDOGENE: AGC 1
PSEUDOGENE: TTA 1
PSEUDOGENE: GAA 1
PSEUDOGENE: AGA 1
PSEUDOGENE: AGG 1
PSEUDOGENE: CGG 1
PSEUDOGENE: ACG 1
PSEUDOGENE: AAG 1
Peptoclostridium acidaminophilum
ATG 1671
ATA 7
TTG 248
GTG 179
ATT 9
ATC 5
CTG 1
PSEUDOGENE: CTA 2
PSEUDOGENE: ATG 11
PSEUDOGENE: TAC 1
PSEUDOGENE: TTA 2
PSEUDOGENE: GAA 1
PSEUDOGENE: AGC 1
PSEUDOGENE: TTG 1
PSEUDOGENE: GTG 1
PSEUDOGENE: ATA 2
PSEUDOGENE: GGT 1
PSEUDOGENE: AAG 1
Ureaplasma urealyticum parvum
ATG 555
GTG 21
TTG 24
TTA 2
ATT 2
ATA 2
ATC 1
PSEUDOGENE: ATG 6
PSEUDOGENE: GTG 1
PSEUDOGENE: CTT 1
PSEUDOGENE: TAT 1
Задание 2
lcl|NZ_CP007452.1_cds_WP_084480872.1_219 [gene=grdH] [locus_tag=EAL2_RS01400] [protein=betaine reductase selenoprotein B] [transl_except=(pos:1045..1047,aa:Sec)] [protein_id=WP_084480872.1] [location=245701..247014] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_084480887.1_365 [gene=fdhF] [locus_tag=EAL2_RS15100] [protein=formate dehydrogenase subunit alpha] [transl_except=(pos:1048..1050,aa:Sec)] [protein_id=WP_084480887.1] [location=397773..400454] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS03405_626 [gene=htpG] [locus_tag=EAL2_RS03405] [protein=molecular chaperone HtpG] [pseudo=true] [location=complement(664766..666649)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS16075_697 [locus_tag=EAL2_RS16075] [protein=pyridoxamine 5'-phosphate oxidase family protein] [pseudo=true] [location=741054..741540] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_084480923.1_826 [gene=grdA] [locus_tag=EAL2_RS04380] [protein=glycine/sarcosine/betaine reductase complex selenoprotein A] [transl_except=(pos:130..132,aa:Sec)] [protein_id=WP_084480923.1] [location=879244..879720] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_084480926.1_827 [gene=grdB] [locus_tag=EAL2_RS04385] [protein=glycine reductase complex selenoprotein B] [transl_except=(pos:1048..1050,aa:Sec)] [protein_id=WP_084480926.1] [location=879743..881059] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS04615_871 [gene=glgA] [locus_tag=EAL2_RS04615] [protein=glycogen synthase GlgA] [pseudo=true] [location=932189..933626] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS05640_1081 [locus_tag=EAL2_RS05640] [protein=IS3 family transposase] [pseudo=true] [location=1130212..1131773] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS15900_1089 [locus_tag=EAL2_RS15900] [protein=ABC transporter substrate-binding protein] [pseudo=true] [location=1139097..1140643] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_084480972.1_1130 [gene=selD] [locus_tag=EAL2_RS05895] [protein=selenide, water dikinase SelD] [transl_except=(pos:52..54,aa:Sec)] [protein_id=WP_084480972.1] [location=1177665..1178708] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS06150_1180 [gene=rpsP] [locus_tag=EAL2_RS06150] [protein=30S ribosomal protein S16] [pseudo=true] [location=1228287..1228560] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS06265_1204 [gene=ruvX] [locus_tag=EAL2_RS06265] [protein=Holliday junction resolvase RuvX] [pseudo=true] [location=1254037..1254458] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS06620_1276 [locus_tag=EAL2_RS06620] [protein=1-deoxy-D-xylulose-5-phosphate reductoisomerase] [pseudo=true] [location=complement(1334323..1335488)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_EAL2_RS07815_1519 [locus_tag=EAL2_RS07815] [protein=IS607 family transposase] [pseudo=true] [location=complement(1569211..1569837)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_334292061.1_1568 [locus_tag=EAL2_RS16030] [protein=iron-sulfur cluster biosynthesis family protein] [transl_except=(pos:112..114,aa:Sec)] [protein_id=WP_334292061.1] [location=complement(1623988..1624290)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_084481061.1_1640 [gene=grdA] [locus_tag=EAL2_RS08400] [protein=glycine/sarcosine/betaine reductase complex selenoprotein A] [transl_except=(pos:130..132,aa:Sec)] [protein_id=WP_084481061.1] [location=complement(1699569..1700045)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_084481064.1_1643 [gene=grdB] [locus_tag=EAL2_RS08420] [protein=glycine reductase complex selenoprotein B] [transl_except=(pos:1048..1050,aa:Sec)] [protein_id=WP_084481064.1] [location=complement(1701711..1703027)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_084481067.1_1644 [gene=grdA] [locus_tag=EAL2_RS08425] [protein=glycine/sarcosine/betaine reductase complex selenoprotein A] [transl_except=(pos:130..132,aa:Sec)] [protein_id=WP_084481067.1] [location=complement(1703044..1703520)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_242842512.1_1756 [gene=saoL] [locus_tag=EAL2_RS08990] [protein=MerB-like organometallic lyase SaoL] [transl_except=(pos:517..519,aa:Sec)] [protein_id=WP_242842512.1] [location=complement(1830969..1831628)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_278246853.1_1759 [gene=saoP] [locus_tag=EAL2_RS09010] [protein=ABC transporter permease subunit SaoP] [transl_except=(pos:634..636,aa:Sec)] [protein_id=WP_278246853.1] [location=complement(1832850..1833662)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_084481119.1_1968 [gene=fdhF] [locus_tag=EAL2_RS15205] [protein=formate dehydrogenase subunit alpha] [transl_except=(pos:1045..1047,aa:Sec)] [protein_id=WP_084481119.1] [location=2059955..2062648] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_239591071.1_2058 [gene=saoB] [locus_tag=EAL2_RS10515] [protein=ABC transporter substrate-binding (seleno)protein SaoB] [transl_except=(pos:217..219,aa:Sec)] [protein_id=WP_239591071.1] [location=complement(2153241..2154038)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_242842469.1_2061 [gene=saoT] [locus_tag=EAL2_RS10535] [protein=thioredoxin-like (seleno)protein SaoT] [transl_except=(pos:40..42,aa:Sec)] [protein_id=WP_242842469.1] [location=complement(2155636..2155890)] [gbkey=CDS]
Задание 3
Bacillus subtilis
TGA 974
TAA 2691
TAG 613
PSEUDOGENE: AAG 2
PSEUDOGENE: AGA 1
PSEUDOGENE: ATA 1
PSEUDOGENE: ATT 1
PSEUDOGENE: CGA 1
PSEUDOGENE: GAC 1
PSEUDOGENE: GAG 1
PSEUDOGENE: GGA 1
PSEUDOGENE: GGT 1
PSEUDOGENE: GTA 1
PSEUDOGENE: TAA 32
PSEUDOGENE: TAG 6
PSEUDOGENE: TGA 9
PSEUDOGENE: TTA 1
Peptoclostridium acidaminophilum
TGA 281
TAA 1083
TAG 756
PSEUDOGENE: ATG 1
PSEUDOGENE: GCC 1
PSEUDOGENE: GGA 1
PSEUDOGENE: TAA 8
PSEUDOGENE: TAG 6
PSEUDOGENE: TAT 1
PSEUDOGENE: TGA 3
PSEUDOGENE: TGG 1
PSEUDOGENE: TTA 1
PSEUDOGENE: TTC 1
Ureaplasma urealyticum parvum
TGA 0
TAA 521
TAG 86
PSEUDOGENE: TAA 8
PSEUDOGENE: TAG 1
Задание 4
Bacillus subtilis
lcl|NZ_LN680001.1_cds_WP_010886623.1_3723 [gene=prfB] [locus_tag=VV28_RS18250] [protein=peptide chain release factor 2] [exception=ribosomal slippage] [protein_id=WP_010886623.1] [location=complement(join(3645147..3646175,3646177..3646248))] [gbkey=CDS]
Peptoclostridium acidaminophilum
lcl|NZ_CP007452.1_cds_WP_148295968.1_564 [locus_tag=EAL2_RS03105] [protein=IS3 family transposase] [exception=ribosomal slippage] [protein_id=WP_148295968.1] [location=join(589839..590088,590088..590950)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_148295968.1_694 [locus_tag=EAL2_RS03750] [protein=IS3 family transposase] [exception=ribosomal slippage] [protein_id=WP_148295968.1] [location=join(736848..737097,737097..737959)] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_096325256.1_1023 [locus_tag=EAL2_RS05360] [protein=IS3 family transposase] [exception=ribosomal slippage] [protein_id=WP_096325256.1] [location=complement(join(1093662..1094533,1094533..1094806))] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_096325256.1_1027 [locus_tag=EAL2_RS05385] [protein=IS3 family transposase] [exception=ribosomal slippage] [protein_id=WP_096325256.1] [location=complement(join(1097590..1098461,1098461..1098734))] [gbkey=CDS]
lcl|NZ_CP007452.1_cds_WP_096325248.1_1716 [gene=prfB] [locus_tag=EAL2_RS08785] [protein=peptide chain release factor 2] [exception=ribosomal slippage] [protein_id=WP_096325248.1] [location=complement(join(1783761..1784795,1784797..1784871))] [gbkey=CDS]