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Term 4

Wellcome!
Here are references to the works of the fourth term.

Block 1. Molecular phylogenetic.

• Pr 1. Phylogenetic tree. Taxonomy.
• Pr 3. Rooting and bootstap.

Block 2. Profiles, signals and evolutionary domains.

• Pr 5. Signals, motives, PWM.
• Pr 6. Motives in proteins. PSSM and patterns. PSI-BLAST. The Bank Prosite.
• Pr 7. Domains. Pfam.
• Pr 8. HMM profile. ROC curve.

Block 3. Functional classes of proteins.

• Pr 10. Enzymes and metabolic pathways. Database KEGG.
• Pr 11. Genomic environment. GO database.
• Pr 12. Transmembrane proteins.